The British have a phrase “Too clever by half”, It needs to go global, especially among hackers. It can have any of several closely related meanings: the one I mean to focus on here has to do with overconfidence in one’s intelligence or skill, and the particular bad consequences that can have. It’s related to Nassim Taleb’s concept of a “fragilista”.
I’ve been getting deeper into timekeeping and calendar-related software the last few years. Besides my work on GPSD, I’m now the tech lead of NTPsec. Accordingly, I have learned a great deal about time mensuration and the many odd problems that beset calendricists. I could tell you more about the flakiness of timezones, leap seconds, and the error budget of UTC than you probably want to know.
Paradoxically, I find that studying the glitches in the system (some of which are quite maddening from a software engineer’s point of view) has left me more opposed to efforts to simplify them out of existence. I am against, as a major example, the efforts to abolish leap seconds.
Last week I decided the time had come to bite the bullet and systematically port the fairly large volume of Python code I maintain from Python 2 to Python 3.
I straightaway ran into a problem, which is that for my purposes the Web resources on on how to do this are pretty awful. And not just in the general, unsurprising sense of being way too full of theory and generality and way too light on practical advice, either.
No, there’s a more specific problem as well. I write systems programs, things like SRC and reposurgeon that have to be able to do string-bashing-like things on binary data without upchucking or (worse) silently mangling that data.
Due to the Python 3 decision that strings are sequences of Unicode code points rather than bytes, this is significantly more difficult in Python 3 than it was in Python 2.
Do we make too many of our software tools automatons when they should be judgment amplifiers? And why don’t we write more DSLs?
Back in the Renaissance there was a literary tradition of explaining natural philosophy via conversations among imaginary characters. I’m going to revive that this evening because I had an IRC conversation this afternoon, about the design insights behind reposurgeon, that pretty much begs to be presented this way.
The person of “Simplicio” was Galileo’s invention in his Dialogue Concerning the Two Chief World Systems. Here he represents four different people, but almost everything he says is something one of them in fact said or very plausibly might have. I’ve cleaned it up, edited, and amplified only a little.
For those of you coming in late, reposurgeon is a tool I wrote for editing version-control histories. It has many applications, including highest-quality repository conversions. Simplicio needed to excise some security-sensitive credentials from a DHS code repository – not just from the tip version but from the entire history. Reposurgeon is pretty much the only practical way to do this.
So, without further ado…
I made a really common and insidious programming mistake recently. I’m going to explain it in detail because every programmer in the world needs the reminder not to do this, and I hope confessing that even “ESR” falls into such a trap will make the less experienced properly wary of it.
Our sutra for today expounds on the sayings of the masters Donald Knuth and Ken Thompson, who in their wisdom have observed “Premature optimization is the root of all evil” and “When in doubt, use brute force.”
The SCCS back end to SRC doesn’t support named symbolic references to numbered revisions, because SCCS masters don’t include a symbol table. This is one of the things RCS added.
Goddess help me, I’ve figured out how to shoehorn in this feature. And probably should not do it.
I just released version 1.7 of SRC, Simple Revision Control.
For those of you late to the party, SRC is a simple version control system for directories full of small standalone files like FAQs, scripts in your ~/bin, dotfiles, and so forth – cases where you don’t want multi-file changesets. It’s actually a Python wrapper around RCS (or, optionally, SCCS) but gives you integer sequential version numbers, lockless operation, and a modern low-friction UI modeled on Subversion’s.
With 1.7, I think it’s finished – the last two user-visible features I had planned were SCCS support and DOT visualization, and those are done now.
I believe SRC is now feature-complete for its functional niche. Am I mistaken? Is anything missing? Did I do anything that seems wrong?
I know SRC has had real users since about 0.3. If you are an SRC user, please check in in the comments. Most importantly, tell me if you need any feature it doesn’t have. I’m also curious if the actual use cases are any different than I expected, and I am all agog to know if anyone actually has a use for the SCCS support.
I needed a break from serious work yesterday, so SRC now speaks SCCS as well as RCS. This wasn’t difficult, I had SRC carefully factored in anticipation from when I originally wrote it.
I can’t say I think this feature will be actually useful; SCCS is pretty primitive, and the SRC support has some annoying limitations as a result. But some hacks you do just because you can, and this is one of them.
If you were reading A&D a year ago, you may recall that I invented a new version-control system to occupy an odd little niche that none of the exiting ones serve very well.
Well, actually, it’s a shell around a very old version-control system that makes a reasonable fast version-storage manager but has a crappy UI. Thus, SRC – RCS reloaded, with a mission to serve cases where you don’t want per-directory changesets but prefer each file to have its own separate change history. Like a directory full of separate FAQs, or your ~/bin full of little scripts.
SRC gives you a modern UI in the svn/hg/git style (but much, much simpler than git’s) and lockless operation. It has full embedded documentation and an Emacs VC backend. If your little project goes multi-file, you can instantly fast-export to git.
Today I shipped Version 1.0. This could have happened sooner, but I’ve been focusing on NTPsec pretty hard in the last year. There was one odd bug in the behavior of multi-file commands that I just hadn’t got around to fixing. (Yes, you can do multi-file commands, but the files still have separate histories.)
The whole thing is just 2KLOC of Python, and that’s with the rather extensive embedded documentation. The sort of person who frequents this blog might find the FAQ entertaining.
I struck a small blow for better security today.
It started last night on an IRC channel with A&D regular Susan Sons admonishing the regulars to rotate their ssh keys regularly – that is, generate and export new key pairs so that is someone cracks the crypto on one out of your sight it won’t be replayable forever.
This is one of those security tasks that doesn’t get done often enough because it’s a fiddly pain in the ass. But (I thought to myself) I have a tool that reduces the pain. Maybe I should try to eliminate it? And started hacking.
The tool was, until yesterday, named ssh-installkeys. It’s a script wrapper written in Python that uses a Python expect engine to login into remote sites and install (or remove) ssh public keys. What makes it useful is that it remembers a lot of annoying details like fixing file and directory permissions so your ssh server won’t see a potential vulnerability and complain. Also, unlike some competing tools, it only requires you to enter your password once per update.
Some time ago I taught this code to log its installations in a config file so you have a record of where you have remote-installed keys. I realized that with a little work this meant I could support a rotate option – mass-install new keys on every site you have recorded. And did that.
I’ve been meaning for some time to change the tool’s name; ssh-installkeys is too long and clumsy. So it’s now sshexport. I also updated it to know about, and generate, ed25519 keys (that being the new hotness in ssh crypto).
In order to reduce the pain, sshexport can now now store your passwords in its list of recorded sites, so you only have to enter the password the first time you install keys and all later rotations are no-hands operations. This doesn’t actually pose much additional security risk because by hypothesis anyone who can read this file has read access to your current private ssh keys already. The correct security measure is whatever you already do to protect other sensitive data in your dot directories, like GPG directories and web passwords stored by your browser. I use drive encryption.
The result is pretty good. Not perfect; the big missing feature is that it doesn’t know how to update your keys on sites like GitLab. That would take a custom method for each such site, probably implemented with curl. Perhaps in a future release.
I released reposurgeon 3.30 today. It has been five years and a month since the first public release.
In those five years, the design concept seems to have proved out very well, finding use in many repository conversions. But the project exhibits an unusual sociology; I don’t get lots of casual contributors, only a few exceptional ones.
You’ve heard me uttering teasers about it for months. Now it’s here. The repository is available for cloning; we’re shipping the 0.9.0 beta of NTPsec. You can browse the web pages or clone the git repository by one of several methods. You can “wget https://github.com/NTPsec/ntpsec/archive/NTPsec_0_9_0.tar.gz” to get a tarball.
This is an initial beta and has some rough edges, mostly due to the rather traumatic (but utterly necessary) replacement of the autoconf build system. Also, our range of ports is still narrow; if you’re on anything but Linux or a recent FreeBSD the build may not work for you yet. These things will be fixed.
However, the core function – syncing your clock via NTP – is solid, and using 0.9.0 for production might be judged a bit adventurous but wouldn’t be crazy. The next few beta releases will rapidly get more polished. Expect them to come quickly, like within weeks.
Most of the changes are under the hood and not user-visible. A few auxiliary tools have been renamed, most notably sntp to ntpdig. If you read documentation, you will notice that what’s there has been massively revised and improved.
The most important change you can’t see is that the code has been very seriously security-hardened, not only by plugging all publicly disclosed holes but by internal preventive measures to close off entire classes of vulnerabilities (by, for example, replacing all function calls that can produce buffer overruns with memory-safe equivalents.)
We’ve already established good relations with security-research and InfoSec communities. Near-future releases will include security fixes currently under embargo.
If you consider this work valuable, please support it by contributing at my Patreon page.
Here’s where I attempt to revive and popularize a fine old word in a new context.
hieratic, adj. Of or concerning priests; priestly. Often used of the ancient Egyptian writing system of abridged hieroglyphics used by priests.
Earlier today I was criticizing the waf build system in email. I wanted to say that its documentation exhibits a common flaw, which is that it reads not much like an explanation but as a memory aid for people who are already initiates of its inner mysteries. But this was not the main thrust of my argument; I wanted to observe it as an aside.
In the wake of the Ars Technica article on NTP vulnerabilities, and Slashdot coverage, there has been sharply increased public interest in the work NTPsec is doing.
A lot of people have gotten the idea that I’m engaged in a full rewrite of the code, however, and that’s not accurate. What’s actually going on is more like a really massive cleanup and hardening effort. To give you some idea how massive, I report that the codebase is now down to about 43% of the size we inherited – in absolute numbers, down from 227KLOC to 97KLOC.
Details, possibly interesting, follow. But this is more than a summary of work; I’m going to use it to talk about good software-engineering practice by example.
NTPsec is preparing for a release, which brought a question to the forefront of my mind. Are tarballs obsolete?
High on my list of Things That Annoy Me When I Hack is sourcefiles that contain huge blobs of license text at the top. That is valuable territory which should be occupied by a header comment explaining the code, not a boatload of boilerplate that I’ve seen hundreds of times before.
Hackers have a lot of superstitious ideas about IP law and one is that these blobs are necessary for the license to be binding. They are not: incorporation by reference is a familiar concept to lawyers and courts, it suffices to unambiguously name the license you want to apply rather than quoting it in full.
This is what I do in my code. But to make the practice really comfortable for lawyers we need a registry of standardized license identifiers and an unambiguous way of specifying that we intend to include by reference.
Comes now the Software Package Data Exchange to solve this problem once and for all. It’s a great idea, I endorse it, and I will be using it in all my software projects from now on.
Sometimes you find performance improvements in the simplest places. Last night I improved the time-stepping precision of NTP by a factor of up to a thousand. With a change of less than 20 lines.
The reason I was able to do this is because the NTP code had not caught up to a change in the precision of modern computer clocks. When it was written, you set time with settimeofday(2), which takes a structure containing seconds and microseconds. But modern POSIX-conformant Unixes have a clock_settime(2) which takes a structure containing seconds and nanoseconds.
The following is a comment I just filed on FCC Docket 15-170, “Amendment of Parts 0, 1, 2, 15, and 18 of the Commission’s Rules et al.”
Thirty years ago I had a small hand in the design of the Internet. Since then I’ve become a senior member of the informal collegium that maintains key pieces of it. You rely on my code every time you use a browser or a smartphone or an ATM. If you ever ride in a driverless car, the nav system will critically depend on code I wrote, and Google Maps already does. Today I’m deeply involved in fixing Internet time service.
I write to endorse the filings by Dave Taht and Bruce Perens (I gave Dave Taht a bit of editorial help). I’m submitting an independent comment because while I agree with the general thrust of their recommendations I think they may not go far enough.
Who are the programmers who are famous for doing programmer things?
I’m wondering about this because my wife Cathy asked me a simple question last night, and I realized I didn’t have an answer to it. “Are you” she asked “the most famous programmer in the world?”
(This copies a comment I left on Derek Lowe’s blog at Science Magazine.)
I was the foundational theorist of open-source software development back in the 1990s, and have received a request to respond to your post on open-source pharma.
Is there misplaced idealism and a certain amount of wishful thinking in the open-source pharma movement? Probably. Something I often find myself pointing out to my more eager followers is that atoms are not bits; atoms are heavy, which means there are significant limiting factors of production other than human attention, and a corresponding problem of capital costs that is difficult to make go away. And I do find people who get all enthusiastic and ignore economics rather embarrassing.
On the other hand, even when that idealism is irrational it is often a useful corrective against equally irrational territoriality. I have observed that corporations have a strong, systemic hunker-down tendency to overprotect their IP, overestimating the amount of secrecy rent they can collect and underestimating the cost savings and additional options generated by going open.
I doubt pharma companies are any exception to this; when you say “the people who are actually spending their own cash to do it have somehow failed to realize any of these savings, because Proprietary” as if it’s credulous nonsense, my answer is “Yes. Yes, in fact, this actually happens everywhere”.
Thus, when I have influence I try to moderate the zeal but not suppress it, hoping that the naive idealists and the reflexive hunker-downers will more or less neutralize each other. It would be better if everybody just did sound praxeology, but human beings are not in general very good at that. Semi-tribalized meme wars fueled by emotional idealism seem to be how we roll as a species. People who want to change the world have to learn to work with human beings as they are, not as we’d like them to be.
If you’re not inclined to sign up with either side, I suggest pragmatically keeping your eye on the things the open-source culture does well and asking if those technologies and habits of thought can be useful in drug discovery. Myself, I think the long-term impact of open data interchange formats and public, cooperatively-maintained registries of pre-competitive data could be huge and is certainly worth serious investment and exploration even in the most selfish ROI terms of every party involved.
The idealists may sound a little woolly at times, but at least they understand this possibility and have the cultural capital to realize it – that part really is software.
Then…we see what we can learn. Once that part of the process has been de-territorialized, options to do analogous things at other places in the pipeline may become more obvious,
P.S: I’ve been a huge fan of your “Things I Won’t Work With” posts. More, please?